Chip-atlas数据库

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August undefined, 2024

WebAug 21, 2024 · ChIP‐Atlas数据库网页工具-（2024年6月份）第21周（总第69周）. 本次分享的文献发表了一个网页数据库，把其它数据库（GEO, ArrayExpress, DDBJ, ENCODE等等）的表观数据（主要是ChIP-seq and DNase-seq）整合，主要是6个模式生物的数据，包括 (human, mouse, rat, fruit fly, nematode, and ... http://www.ciidbnu.org/chip/

中国收入分配研究院 China Institute For Income Distribution-CHIP …

WebData were obtained from Human Protein Atlas Dataset available from proteinatlas.org. 不仅可以直接使用，而且可以独立撑起一个figure。. 这数据库，我王多余学了。. THE HUMAN PROTEIN ATLAS，简称HPA，分为 Cell，Tissue和Pathology 三个版块，分别展示了蛋白在细胞、正常组织和癌变组织中的 ... WebChIP-Atlas is able to show alignment and peak-call results for all public ChIP-seq and DNase-seq data archived in the NCBI Sequence Read Archive (SRA), which … i mean christmas

ChIP-Atlas

WebApr 18, 2024 · 芯片图集是一个数据库，它收集根据ChIP-Seq和DNase-Seq数据计算出的床文件，这些数据已存储在Sequence Read Archive（SRA）中。该数据库具有Web界面，可从计算出的峰调用数据 … WebTIMER is a comprehensive resource for systematical analysis of immune infiltrates across diverse cancer types. This version of webserver provides immune infiltrates' abundances estimated by multiple immune deconvolution methods, and allows users to generate high-quality figures dynamically to explore tumor immunological, clinical and genomic ... WebOct 4, 2024 · ChIP-Atlas. An integrative, comprehensive database to explore public Epigenetic dataset, including ChIP-Seq, DNase-Seq, ATAC-Seq, and Bisulfite-Seq data: ChIP-Atlas covers almost all public data … ime and dsh

学会了HPA数据库，直接拿来发SCI - 哔哩哔哩

WebAging Atlas aims to compile large gene expression and regulation datasets created by a range of high-throughput omics technologies and serve as a valuable resource for a range of life science researchers. The current implementation includes five modules: transcriptomics, epigenomics, single-cell transcriptomics, proteomics, and pharmacogenomics. WebThe most complete collection of uniformly processed ChIP-seq data on identification of transcription factor binding sites for human and mouse. Convenient web interface with … ime and dgmeWebchip 调查与 nbs 住户调查十分类似。 li 等学者（ 2008 ）曾探讨过 nbs 住户调查样本是如何选择的。其他有关 nbs 调查的细节可详见最新的 nbs 统计报告和相关出版物。所有的 … ime and gme

"WebFANTOM5 miRNA atlas. The FANTOM5 integrated miRNA expression atlas shows the expression patterns of miRNAs profiled by sequencing short RNA libraries obtained from human, mouse, rat dog and chicken samples. Both the sRNA expression profile of the mature miRNA and the CAGE expression profile of its associated promoter can be … " - Chip-atlas数据库

Chip-atlas数据库

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WebThe most complete collection of uniformly processed ChIP-seq data on identification of transcription factor binding sites for human and mouse. Convenient web interface with advanced search, browsing and genome browser based on the BioUML platform. For support or any questions contact [email protected]. Start » Documentation » Download ... WebNov 23, 2024 · ChIP-Atlas收集整理了SRA数据库中的大量chip_seq数据，并基于这些原始数据进行了后续分析，将分析结果整理成在线服务并发布，方便检索与查询/ 构建的流程如下. 下载SRA原始数据，采用sratoolkit转换成fastq, 然后用bowtie2比对参考基因组，用macs2进行peak calling。官网 ...

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WebThe Pathology Atlas contains mRNA and protein expression data for the most common forms of human cancer. Correlation analyses based on mRNA expression levels of human genes in cancer tissue and the clinical outcome for almost 8000 corresponding cancer patients is presented in a gene-centric manner, and includes more than 18000 Kaplan … WebThe Zebrafish Information Network (ZFIN) is the database of genetic and genomic data for the zebrafish ( Danio rerio) as a model organism. ZFIN provides a wide array of expertly curated, organized and cross-referenced zebrafish research data. Learn More.

Web选择完之后，igv内就会倒入这个TF的chip-seq的数据，如下图。你可以在igv中找到自己的gene of interest，然后看看这个峰的位置在哪。以上就是教你如何利用现有的public Chip-seq数据来搜索调控你gene的TF。 WebKidney Renal Clear Cell Carcinoma (TCGA, PanCancer Atlas) 512 samples. Renal Clear Cell Carcinoma (UTokyo, Nat Genet 2013) 106 samples. Renal Non-Clear Cell Carcinoma Select All; Kidney Chromophobe (TCGA, Cancer Cell 2014) 66 samples. Kidney Chromophobe (TCGA, Firehose Legacy) 113 samples.

WebChIPBase v3.0 identified ~151,187,000 regulatory relationships between ~171,600 genes and ~3,000 regulators by analyzing ~55,000 ChIP-seq datasets, which represent a 30 … WebDec 18, 2024 · ChIP-Atlas收集整理了SRA数据库中的大量chip_seq数据，并基于这些原始数据进行了后续分析，将分析结果整理成在线服务并发布，方便检索与查询，网址如下. …

WebJun 21, 2024 · 欢迎关注”生信修炼手册”! ChIP-Atlas收集整理了SRA数据库中的大量chip_seq数据，并基于这些原始数据进行了后续分析，将分析结果整理成在线服务并发 …

WebMar 28, 2024 · 为了弥补这个不足，研究人员开发了基因转录调控数据库：GTRD。. GTRD从SRA、GEO、ENCODE等公共数据库中收集转录因子相关的ChIP-seq数据，采用标准流程进行peak calling分析，并基于已有的 … i mean choo choohttp://chip-atlas.org/ list of natural cosmeticsWebGene Expression Omnibus. GEO is a public functional genomics data repository supporting MIAME-compliant data submissions. Array- and sequence-based data are accepted. … ime and fceWebThe Cancer Genome Atlas (TCGA), a landmark cancer genomics program, molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types. This joint effort between NCI and the National Human Genome Research Institute began in 2006, bringing together researchers from diverse disciplines and multiple … i mean business sayinghttp://www.ciidbnu.org/chip/ i mean folks where\u0027s the lieWebENCODE. Functional genomics. Functional characterization. Encyclopedia of elements. Rush Alzheimer’s. EN-TEx. Deeply profiled cell lines. Protein knockdown (Degron) Computational and integrative products. ime and nia long i mean expression